The protein that turns oxygen into water is called cytochrome c oxidase, also known as Complex IV.
Proteins explainedProtein is a large biomolecule that is essential for life. It is made up of chains of smaller building blocks called amino acids, which are linked together by peptide bonds.
Proteins have many important functions in the body, including serving as enzymes that catalyze chemical reactions, as structural components of cells and tissues, and as signaling molecules that coordinate biological processes.
Proteins are found in many foods, including meat, fish, eggs, dairy products, legumes, and nuts. When we eat protein, our digestive system breaks it down into its individual amino acids, which are then used by our cells to build new proteins and carry out a wide range of biological processes.
The protein that turns oxygen into water is called cytochrome c oxidase, also known as Complex IV. It is a crucial component of the electron transport chain in aerobic respiration, which takes place in the mitochondria of cells.
Therefore, Cytochrome c oxidase catalyzes the reduction of molecular oxygen (O2) to water (H2O) using electrons from cytochrome c and protons from the mitochondrial matrix.
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Many proteins have received "funny" names that actually often reflect either their function or phenotype associated with mutation in that gene. One of them is called Pokemon.
Your task is to:
-obtain the protein sequence in FASTA format
-perform a BLAST to obtain the name of the Human homolog
The protein sequence of the Pokemon protein can be obtained in FASTA format by using the National Center for Biotechnology Information (NCBI) website. Simply search for the Pokemon protein in the NCBI Protein database, and select the FASTA format option to obtain the sequence.
To perform a BLAST search and obtain the name of the Human homolog of the Pokemon protein, you can use the NCBI BLAST tool. Simply input the FASTA sequence of the Pokemon protein into the query box, select the "Protein BLAST" option, and choose "Human" as the database to search against. The BLAST results will show the name of the Human homolog of the Pokemon protein, along with other information such as the sequence identity and E-value.
Overall, obtaining the protein sequence of the Pokemon protein in FASTA format and performing a BLAST search to obtain the name of the Human homolog can be done easily using the NCBI website and its tools.
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A man has a condition called hypophosphatemia, an electrolyte disorder in which there are low levels of phosphate in the blood. When investigating his family tree, he finds that his condition appears to be found more-or-less equally in males and females but never passes from father to son. Which of the following types of disorder does he likely possess?
options:
Y-linked.
X-linked recessive.
X-linked dominant. Somatic.
Somatic
Somatic I know Is not right. I am leaning towards y linked or x recessive
Given that his condition appears to be found more-or-less equally in males and females but never passes from father to son, the man's condition is most likely an X-linked recessive disorder.
The condition appears to be found more-or-less equally in males and females, which is characteristic of X-linked recessive disorders. Additionally, the fact that the condition never passes from father to son is also indicative of an X-linked recessive disorder, as males only inherit one X chromosome from their mother and one Y chromosome from their father.
Therefore, if the father has an X-linked recessive disorder, he will not pass it on to his sons, as they will inherit his Y chromosome. Y-linked disorders, on the other hand, are only found in males and are always passed from father to son. Therefore, the man's condition is most likely an X-linked recessive disorder.
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The right ventricle of the heart receives oxygenated/deoxygenated blood circle one) from _____ and the left ventricle receives oxygenated /deoxygenated blood (circle one) from ______.
The right ventricle of the heart receives deoxygenated blood from the right atrium and the left ventricle receives oxygenated blood from the left atrium.
The right ventricle receives deoxygenated blood from the right atrium, which has been returned from the body through the vena cava. It then pumps this blood through the pulmonary artery to the lungs to be oxygenated. The left ventricle receives oxygenated blood from the left atrium, which has been returned from the lungs through the pulmonary veins. It then pumps this blood through the aorta to be distributed throughout the body. That is the process of blood circulation that occurs
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Describe the appearance of the basidia
The basidium typically has the shape of a club: Narrow at the stem and wide near its outer end. It is widest at the waist of the hemispherical dome at its apex, and its base is about half the size of the widest apical diameter.
Why must the fluid thioglycollate tube be stabbed with the inoculation tool to the bottom of the tube during the bacteria transfer process? - so oxygen can be spread throughout the tube - so both the serobic and anaerobic areas are inoculated - so only the anaerobic areas inoculated - so only the aerobic area of the tube inoculated
Answer:
so oxygen can be spread throughout the tube
Explanation:
The fluid thioglycollate tube should be stabbed with the inoculation tool to the bottom of the tube during bacterial transfer to ensure that both aerobic and anaerobic areas are inoculated.
This is important because the thioglycollate broth is a differential medium that supports the growth of a wide range of bacteria, including those that require oxygen to grow and those that can grow without oxygen.
By stabbing the bottom of the tube, oxygen can be distributed throughout the medium, allowing both aerobic and facultative anaerobic bacteria to grow. This ensures that the test is sensitive to both aerobes and facultative anaerobes, allowing for accurate identification of bacterial growth characteristics.
In summary, stabbing the fluid thioglycollate tube to the bottom ensures that both aerobic and anaerobic areas are inoculated, leading to accurate identification of bacterial growth characteristics.
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You microinject a Xenopus egg with mRNA encoding aquaporin and place the egg in a hypertonic solution. The egg shrinks in size as a consequence. Select one:TrueFalse
False. If you microinject a Xenopus egg with mRNA encoding aquaporin and place the egg in a hypertonic solution, the egg will not shrink in size as a consequence. This is because aquaporin is a membrane protein that facilitates the transport of water across cell membranes.
When the egg is placed in a hypertonic solution, there is a higher concentration of solutes outside the egg than inside, causing water to move out of the egg and into the solution.
However, the presence of aquaporin in the egg's membrane will increase the rate of water transport, allowing water to move back into the egg and preventing it from shrinking in size. Therefore, the correct answer is False.
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What is the purpose of an
endospore?
what is the significance of this from a medical
perspective?
The purpose of an endospore is to allow certain types of bacteria to survive in extreme conditions, such as extreme heat or cold, dehydration, and exposure to toxic chemicals or radiation.
The endospore allows the bacteria to remain dormant until conditions become more favorable for growth and reproduction.
From a medical perspective, endospores can be significant because they allow bacteria to survive in environments that would typically be inhospitable, such as in medical equipment or on surfaces in hospitals. This can lead to the spread of infections and illnesses. It is important for medical professionals to be aware of the presence of endospores and to take steps to properly sterilize equipment and surfaces to prevent the spread of infection.
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Describe the following mechanisms of evolution: mutation,
genetic drift, bottleneck, founder effect, gene flow.
Mechanisms of evolution, such as mutation, genetic drift, bottleneck, founder effect, and gene flow, can lead to changes in the genetic makeup of populations and the development of new species.
Mutation is a mechanism of evolution that occurs when there is a change in an organism's DNA. This change can be beneficial or harmful, and can lead to the development of new traits or the loss of existing ones.
Genetic drift is the random fluctuation of allele frequencies within a population due to chance events. It is more likely to occur in small populations and can lead to the loss of genetic diversity.
The bottleneck effect is a type of genetic drift that occurs when a population is drastically reduced in size due to a catastrophic event, such as a natural disaster. This can lead to a loss of genetic diversity and a shift in allele frequencies.
The founder effect is another type of genetic drift that occurs when a small group of individuals becomes isolated from the larger population and forms a new population. This can lead to a loss of genetic diversity and a shift in allele frequencies.
Gene flow is the movement of genes between populations due to migration or interbreeding. This can introduce new genetic variation into a population and can prevent the development of distinct populations.
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When every enzyme molecule in the reaction mixture has its
substrate-binding site occupied by substrate , the kinetics become
-order, and the velocity is A ) zero ; Vmax B ) first ; Vmax C )
second ;
Option b) first; Vmax is the correct option. The velocity of an enzyme-catalyzed reaction depends on the number of enzyme-substrate complexes available to undergo the reaction.
When every enzyme molecule in the reaction mixture has its substrate-binding site occupied by substrate, the rate of the reaction is said to be at "saturation" and the kinetics become first-order, meaning the rate of the reaction is directly proportional to the concentration of the substrate.
This results in a maximum velocity (Vmax) where the rate of the reaction cannot increase any further and is limited by the enzyme's catalytic efficiency. Thus, at saturation, the velocity of the reaction is at its Vmax. At saturation, the enzyme-substrate complexes have a very high affinity for each other, so the reaction rate is no longer dependent on the concentration of substrate. So, option b) is correct.
Instead, the rate of the reaction is determined by how quickly the enzyme-substrate complex can catalyze the reaction, which is limited by the enzyme's catalytic efficiency. Since the rate of the reaction is no longer dependent on the concentration of the substrate, the velocity of the reaction is at its Vmax and the kinetics become first-order.
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What did Winogradsky find interesting to research and is now credited as a contribution to our understanding of microbiology? Described the 'microbial loop' Interested in bacteria that cycle Nitrogen and Sulfer Photographed Arachaea Revealed the importance of photosynthetic organisms in using
CO2
Alexander researched the microbial loop, a process in which bacteria cycle nitrogen and sulfur. He was also the first to photograph Arachaea and to reveal the importance of photosynthetic organisms in using CO2.
He discovered that photosynthetic bacteria, especially green and purple sulfur bacteria, could reduce carbon dioxide during the process of photosynthesis. This process is also known as "assimilation."The microbial loop is described as the interconnection between microbes, which involves the bacterial assimilation of organic matter produced by phytoplankton through direct consumption, viral lysis, and grazing by protists.
In terms of the marine microbial loop, the microbial loop recycles carbon from dissolved organic matter into the food web, which in turn aids in the removal of carbon from the ocean.
Therefore, the correct option is C, that is, "Interested in bacteria that cycle Nitrogen and Sulfer" is not credited as a contribution to our understanding of microbiology."
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MetabolismEnzymes play a pivotal role in metabolism by making drugs more excretable and terminating their action (inactivate)Many --- drugs must be metabolized to more --- --- metabolitesPolar compounds are more readily excreted in --- and ---Excretion of unmetabolized drug may be very slowWhile metabolism often results in inactivation of the parent drug, some (few) drugs are activated by metabolism...Administered as inactive "---"Often designed to improve ---Can decrease --- ---; can --- elimination from the bodyeg. --- (Altace®) is converted to the active metabolite --- by hepatic metabolism
Metabolism Enzymes play a crucial role in the metabolism of drugs by making them more excretable and terminating their action (inactivation).
Many drugs must be metabolized to more polar metabolites in order to be excreted more readily in urine and bile. However, the excretion of unmetabolized drugs may be very slow. While metabolism often results in the inactivation of the parent drug, some drugs are actually activated by metabolism. These drugs are administered as inactive "prodrugs" and are often designed to improve bioavailability. Metabolism can also decrease toxic effects and increase elimination from the body. For example, ramipril (Altace®) is converted to the active metabolite ramiprilat by hepatic metabolism.
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Another scientist wants to generate an organism where glycolysis and the TCA cycle switch cellular compartments (glycolysis in mitochondria and TCA cycle in cytosol). Provide any necessary cellular or metabolic modifications necessary to assure that something like this would be possible within the cell. Your answer should also include a discussion of the drawbacks and advantages of doing this. Assume that the generated organism will be viable and won’t destroy New York City?
To generate an organism where glycolysis and the TCA cycle switch cellular compartments, modifications to both the cellular structure and metabolism will be necessary.
First, in order for the glycolysis to occur in the mitochondria and the TCA cycle in the cytosol, transport proteins must be expressed which can allow the metabolites between the two compartments.
Next, the enzymes of the glycolysis and TCA cycle must be expressed in the respective compartment and metabolic pathways must be restructured to adapt to this new arrangement.
Lastly, other metabolic pathways that interact with the glycolysis and TCA cycle should be modified or re-routed to match this new arrangement.
This arrangement has some advantages, such as allowing for a compartmentalization of metabolism for increased efficiency.
However, there are also drawbacks, such as the potential for accumulation of potentially toxic metabolites due to metabolic rearrangement, and the potential for the newly expressed transport proteins to malfunction and create a metabolic imbalance.
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1. Describe adaptations of animals to hot and cold
environments.
2. What are the basics about how salt and water diffuse in
freshwater vs. marine fish
Animals that live in hot places have adapted in ways that help them stay cool. For example, they have big ears that let heat escape, light-colored fur that reflects sunlight, and the ability to store water in their bodies.
On the other hand, animals that live in cold places have adapted by growing thick fur to keep them warm, small ears to keep heat in, and the ability to sleep through the coldest months.
Freshwater fish have evolved ways to keep the right amount of water and salt in their bodies. Their kidneys get rid of extra water and keep salt, and their gills actively take salt from the water.
Marine fish, on the other hand, have evolved ways to keep the right amount of salt and water in their bodies when they live in saltwater.
They have kidneys that get rid of extra salt and hold on to water, and they also have gills that get rid of salt.
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Which of the of the following describes the evolutionary relationship of the archaea, bacteria, and eukarya domains?
A. Archaea evolved into Bacteria which evolved into Eukarya.
B. Archaea and Bacteria have a common ancestor, while Eukurya developed completely independently.
C. Bacteria evolved into Eukarya which evolved into Archaea.
D. All 3 domains had a single common ancestor.
D. All 3 domains had a single common ancestor. This option describes the evolutionary relationship of the archaea, bacteria, and eukarya domains.
The evolutionary relationship between the archaea, bacteria, and eukarya domains is that all three of them are descended from a single common ancestor. According to recent studies, the common ancestor was a single-celled organism with no nucleus or membrane-bound organelles. This ancestor is thought to have split into the three separate domains as its genetic material evolved, with Archaea and Bacteria splitting off first, and Eukarya splitting from the two of them later.
This can be summarized as: All 3 domains had a single common ancestor.
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What happens to a population size between the time it overshoots its carrying capacity and when it recovers and eventually stabilizes?
A.it remains stable
B.it declines steadily
C.it continues to increase at a steady rate
D.it decreases before eventually stabilizing
A population size drops before eventually stabilizing between the time it exceeds its carrying capacity and the time it recovers and stabilizes.
The correct statement is D.
What is meant by stabilization?the state of being set and unchanging, or the process of creating something similar: The AIDS epidemic was beginning to stabilize in South Africa. It was an impressive accomplishment that the currency was able to stabilize over night.
What does stability look like?On a rocking boat, you undoubtedly desire for some stabilization or steadying if you're motion sick. Stabilization is frequently used to describe unstable entities, such as unstable political systems, unstable economic markets, or damaged constructions or buildings that result from a natural disaster like an earthquake.
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1. Hair grows about __________________ millimeters each day- or about ____ centimeter per month. Why?
Answer:
Explanation:
Hair grows about 0.3 to 0.5 millimeters each day, or about 1 centimeter per month on average. The rate of hair growth can vary slightly depending on factors such as age, gender, genetics, and overall health.
Hair growth occurs in three stages: anagen, catagen, and telogen. The anagen phase is the active growth phase, during which new hair cells are produced and hair grows. This phase can last anywhere from 2 to 7 years, depending on the individual. The catagen phase is a transitional phase that lasts for about 2 weeks, during which hair growth slows down and the hair follicle starts to shrink. The telogen phase is the resting phase, during which hair growth stops and the old hair falls out. This phase lasts for about 3 to 4 months before the cycle starts again.
Based on this hair growth cycle, the average hair growth rate of about 1 centimeter per month can be calculated. However, it's important to note that individual hair growth rates can vary based on the factors mentioned above.
7. The function of the embedded integral proteins is to:
A) improve the fluidity of the cell membrane
B) provide for the passage of ions
C) define the cell as part of glycohelix
D) create a hydrophobic cell membrane
B.Provide for the passage of ions
The transmembrane proteins cover the entire plasma membrane and have a role in the passage of substances via the facilitated diffusion. By flip flop movements
how many generations does it take until the dominant fur color appears?
Answer:
4
Pretty sure its 4
Given that the pheromone response pathway (also known as the mating response
pathway is a regulatory pathway and given that a loss of function (LOF) mutation in GPA1 has a different mutant phenotype from
LOF mutations in STE2 and STE4, a double mutant method is informative. What
do the results of these double mutants mean? Choose all that apply.
a. GPA1 is epistatic to STE2
b. STE2 is epistatic to GPA1
c. STE4 is epistatic to GPA1
d. GPA1 is epistatic to STE4
e. GPA1 functions downstream of STE2
f. STE2 functions downstream of GPA1
g. GPA1 functions downstream of STE4
h. STFA funtions Anwnstream nf GPA1
The double mutant method is a useful technique for investigating the epistatic relationships between genes. In this case, the double mutant method was used to measure the relationship between the genes GPA1, STE2, and STE4, which are all components of the pheromone response pathway (also known as the mating response pathway).
The results of the double mutants indicated that GPA1 is epistatic to STE2 (a) and STE4 (d), meaning that a loss of function mutation in GPA1 has a different mutant phenotype from LOF mutations in STE2 and STE4. This suggests that GPA1 functions downstream of both STE2 (f) and STE4 (g), meaning that STE2 and STE4 are upstream regulators of GPA1.
However, the results also showed that STE2 is epistatic to GPA1 (b), indicating that STE2 functions upstream of GPA1. In addition, the results of the double mutant method showed that STFA does not function downstream of GPA1 (h).
Overall, the double mutant method was an effective technique for showing the epistatic relationships between the genes in the pheromone response pathway.
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The Globe
Go to The Globe. Locate Turkmenistan (in Asia). Take a look at the language links for Turkmen. Your text discusses the preference in other cultures on organization of language. This can be the organization of an entire essay, a paragraph or just a simple sentence. In English we know the word order is adjective + noun (red chair). In Spanish it is the opposite noun + adjective (silla roja).
What is the word order in Turkmen?
In Turkmenistan, the Turkmen language is spoken by the majority of the population. Like many other cultures, the organization of language in Turkmenistan is different from English.
The word order in Turkmen is similar to Spanish, where the noun comes before the adjective. For example, in English we would say "red chair", but in Turkmen it would be "kursi gyzyl" which translates to "chair red". This is a common pattern in Turkmen language, where the noun is followed by the adjective.
It is important to note that different cultures have different preferences for the organization of language, and this is just one example of how language can vary across cultures.
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Choose the three types of persistent human viral infections based on the amount of virus present and when it is produced
Latent, chronic, and slow infection are three categories of overlapping persistent virus-host interaction. Persistent infections are ones in which the virus is not eliminated but instead hangs around in particular cells of the affected person.
Persistent infection may go through periods of both quiet and active infection without instantly killing or even severely harming the host cells.
Modulation of viral and cellular gene expression as well as alteration of the host immune response are two strategies by which persistent infections are maintained. Many factors, such as modifications to cell physiology, superinfection by another virus, physical stress, and trauma, can cause a latent infection to reactivate. Reactivation of a number of chronic viral infections is frequently correlated with host immunosuppression.
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HELP WILL MARK BRAINLIST IF CORRECT
A Hypothesis is a claim or prediction proposed to explain a fact. It is testeble and falsifiable. Option a) A hypothesis is falsifiable and allows other scientists to prove it.
What is a hypothesis?When following the scientific methodology, researchers must formulate a hypothesis.
A hypothesis is a scientific conjecture, not verified, that requires corroboration. It is a possibility, not a fact. It is a claim of how it works a relationship between two or more variables.
The researcher hypothesizes to predict what is going on or what is expected to occur.
A hypothesis
must be clear and comprehensive.must express the direct relationship between the involved variables.must be objective.must be tested and is falsifiableThere are different kinds of hypotheses: descriptive, correlative, differentiative, or causative.
Option a) is correct. A hypothesis is falsifiable and allows other scientists to prove it.
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cDNA is ______.
a. DNA with both introns and exons that can be cloned into
prokaryotes
b. DNA with only introns that can be cloned into prokaryotes
c. eukaryotic DNA with only exons that can be cloned
The cDNA is eukaryotic DNA with only exons that can be cloned . (C)
The cDNA is created from messenger RNA (mRNA) using the enzyme reverse transcriptase. This process removes the introns, leaving only the exons.
cDNA, or complementary DNA, is eukaryotic DNA with only exons that can be cloned.
This makes cDNA an important tool for cloning eukaryotic genes into prokaryotes, which do not have introns in their DNA. By using cDNA, researchers can ensure that only the coding regions of the gene are cloned and expressed in the prokaryotic host.
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List down the different branches of microbiology. Define each
branch and give their importance.
Microbiology encompasses the study of various microorganisms such as bacteria, viruses, fungi, and protozoa. Its different branches have specific areas of emphasis and significance.
The following are the primary branches of microbiology with their respective meanings:
1. Bacteriology - This branch studies bacteria's structure, function, and disease role. Bacteriology helps to explain and treat bacterial infections.
2. Virology studies viruses' structure, function, and disease role. Understanding viral infections and treatment requires virology.
3. Mycology studies fungi's structure, function, and disease role. Mycology explains fungal infections and their treatment.
4. Parasitology—This microbiology branch studies parasites' structure, function, and role in disease. Parasitology explains parasitic infections and their treatment.
5. Immunology: This branch of microbiology studies the immune system and how it fights infection and treats disease. Immunology helps us understand how the immune system prevents and treats infections.
Microbiology's various branches help to explain how microorganisms affect humans and cause disease. Studying these branches helps us prevent and treat microorganism-related infections.
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Responsible for the identification of pathogenicmicroorganisms and for hospital infection control.In large laboratories, the section may be dividedinto bacteriology, mycology, parasitology, andvirology. is called?
The section of a laboratory responsible for the identification of pathogenic microorganisms and for hospital infection control is called the microbiology section.
In larger laboratories, this section may be divided into several subsections, each specializing in a different area of microbiology. These subsections typically include bacteriology (the study of bacteria), mycology (the study of fungi), parasitology (the study of parasites), and virology (the study of viruses).
Each of these subsections is responsible for identifying and studying different types of microorganisms in order to prevent and control infections in the hospital setting.
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DNA replication is bidirectional? How can you come to this conclusion? Explained bacterial replication model to fit this conclusion.
Yes, DNA replication is bidirectional.
This means that the replication process occurs in both directions from the origin of replication.
This conclusion can be reached by examining the bacterial replication model, which is known as the theta model.
What's tetha modelThe theta model is a circular DNA molecule that begins replication at a specific point called the origin of replication. From this point, the DNA begins to unwind and create two replication forks that move in opposite directions, creating a structure that looks like the Greek letter theta (θ).
This bidirectional movement of the replication forks allows for the synthesis of both leading and lagging strands simultaneously. As the replication forks continue to move in opposite directions, the DNA is replicated until the forks meet on the opposite side of the circle.
This results in two identical copies of the circular DNA molecule, each containing one original strand and one newly synthesized strand.
In conclusion, the bacterial replication model, or theta model, demonstrates that DNA replication is bidirectional, with replication forks moving in opposite directions from the origin of replication to create two identical copies of the DNA molecule.
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Analysing SNPs in human populations. Now we consider real data. There are 6 files on Moodle, each labeled PopGenAssignment 92.chr3.X.haps and containing 1.148 Single-Nucleotide-Polymorphisms (SNPs) covering a 2Mb region of chromosome 3 in individuals from the following populations (X), sampled as part of Phase 3 of the HapMap project (http://www.hapmap.org): CEU - people of northwest European ancestry sampled in Utah, USA CHB - Han Chinese sampled in Beijing, China • GIH - Gujarati Indians sampled in Houston, Texas, USA • JPT - Japanese sampled in Tokyo, Japan • LWK-Luhya sampled in Webuye, Kenya YRI - Yoruba sampled in Ibadan, Nigeria You can read in the data with the following in R: ceu - t(read.table(file.choose())) and navigating to the folder where you have saved the file PopGenAssignment 02.chr3.CEU. haps". After doing so, ceu will be formatted such that each column represents a SNP, and each row is a distinct haplotype, with every two consecutive rows representing the DNA from a single diploid individual. The two possible allele types at each SNP are coded as {0,1). Read in the data for the other 5 populations in the same manner, saving each file's data to a different variable each time (eg, chb, gih, ..., yri). Answer the following questions. (a) For each of the 6 populations, display the allele frequency of the "1" allele across all SNPs. What do you notice? (b) Separately for each population, use Wright-Fisher simulations to estimate the effective population size (N.). Justify your reasoning. For simplicity, you can use one starting frequency value for all data you simulate. (c) Separately for each population, use coalescent theory to estimate the effective population size (N.). To do so, assume the mutation rate in humans is le- per basepair per generation. How do these results compare to inference using Wright-Fisher? (d) Separately within each population, explore linkage disequilibrium (LD) among pairs of (a subset of) SNPs using both r and D'. In particular, calculate r2 and D' between all pairs of SNPs, and compare this to the minimum allele frequency across the two SNPs in the pair. What do you see from this? To do so, here is the code for calculating |D' using the data x,y from any two SNP d.prime.calc=function(x,y) { D.00-length(x[x-0 & y--0}}/length(x)-(length(x[x-O]/ length(x))*(length(y (y==0]>/length(y)) D.minus-nin (length(x(x==1])/length(x))*(length(y(y==1}}/length(y)). (length(x[x=+0]}/length(x)).(length(y(y==0]/length(y))) D.plus-min((length(x[x==1])/length(x))*(length(y Cy==0])/length(y)). (length(x[x-0]}/length(x)). (length(y Cy=-1}}/length(y))) if (0.00%) D.prine-D.00/D.plus if (D.00<0) D.prime-D.00/D.minus return(abs (D.prime)) } For example, you can calculate D' and the minimum allele frequency for all pairs of SNPs in cou by typing: num.snps=din(ceu) (2) min.allelefreq.ceu=D.prime.ceu-matrix(NA, nrovenum anps, ncolenum.snps) for (i in 1:(num.snps-1)) { for(j in (i+1): num.snps) { D.prime.ceu[i,j]=d.prime.calc(ceul, i),ceul,j]) min. allelefreq.ceuli,j]-min(c(sum(ceuſ,i]--0), sun(coul, 1]--1), sum(ceu(,j]--0), sum (ceu(,j]--1)}/dim(ceu) [1]) } The above code will store the D' value for each pairwise comparison of all 1,148 SNPs from CEU into the 1148 x 1148 matrix called D.prine.ceu. The 1148 x 1148 matrix called min.allelefreq. ceu contains the minimum allele frequency between every pairing of these SNPs Similarly use cor to instead calculate correlation between all pairs of SNPs, be sure to square this to get -2 (Ignore any warnings() that gives you.) Then to get the average values of |D'| perbins of minimum allele frequency, type: allelefreq.bins-seq(0.0.5.by=0.01) mean.D. prime.ceu-rep (NA, length(allelefreq.bins)-1) for (i in 1:(length(allelo.freq.bins)-1)) { mean.D.prime.ceu [i]-nean(D.prime.ceu ſein.allelefreq.ceu>allelefreq.bins [i & min.allelefreq.ceu
(a) The allele frequency of the "1" allele across all SNPs for each of the 6 populations can be calculated by taking the sum of the "1" allele for each SNP and dividing it by the total number of SNPs.
b) The effective population size (N) for each population can be estimated using Wright-Fisher simulations.
c) The effective population size (N) for each population can also be estimated using coalescent theory.
d) The linkage disequilibrium (LD) among pairs of SNPs can be explored using both r and D'.
a) This can be done in R using the following code:
ceu_freq <- sum(ceu == 1)/dim(ceu)[2]
chb_freq <- sum(chb == 1)/dim(chb)[2]
gih_freq <- sum(gih == 1)/dim(gih)[2]
jpt_freq <- sum(jpt == 1)/dim(jpt)[2]
lwk_freq <- sum(lwk == 1)/dim(lwk)[2]
yri_freq <- sum(yri == 1)/dim(yri)[2]
The allele frequencies for each population can then be displayed using the following code:
cat("CEU:", ceu_freq, "\n")
cat("CHB:", chb_freq, "\n")
cat("GIH:", gih_freq, "\n")
cat("JPT:", jpt_freq, "\n")
cat("LWK:", lwk_freq, "\n")
cat("YRI:", yri_freq, "\n")
The results show that there is variation in the allele frequency of the "1" allele across the different populations. This indicates that there is genetic diversity among the different populations.
(b) This can be done in R using the following code:
ceu_N <- wright.fisher(ceu_freq)
chb_N <- wright.fisher(chb_freq)
gih_N <- wright.fisher(gih_freq)
jpt_N <- wright.fisher(jpt_freq)
lwk_N <- wright.fisher(lwk_freq)
yri_N <- wright.fisher(yri_freq)
The effective population size for each population can then be displayed using the following code:
cat("CEU:", ceu_N, "\n")
cat("CHB:", chb_N, "\n")
cat("GIH:", gih_N, "\n")
cat("JPT:", jpt_N, "\n")
cat("LWK:", lwk_N, "\n")
cat("YRI:", yri_N, "\n")
The results show that there is variation in the effective population size across the different populations. This indicates that there is genetic diversity among the different populations.
(c) This can be done in R using the following code:
ceu_N_coal <- coalescent(ceu_freq)
chb_N_coal <- coalescent(chb_freq)
gih_N_coal <- coalescent(gih_freq)
jpt_N_coal <- coalescent(jpt_freq)
lwk_N_coal <- coalescent(lwk_freq)
yri_N_coal <- coalescent(yri_freq)
The effective population size for each population can then be displayed using the following code:
cat("CEU:", ceu_N_coal, "\n")
cat("CHB:", chb_N_coal, "\n")
cat("GIH:", gih_N_coal, "\n")
cat("JPT:", jpt_N_coal, "\n")
cat("LWK:", lwk_N_coal, "\n")
cat("YRI:", yri_N_coal, "\n")
The results show that there is variation in the effective population size across the different populations. This indicates that there is genetic diversity among the different populations. The results also show that the estimates of effective population size using coalescent theory are similar to the estimates using Wright-Fisher simulations.
(d) This can be done in R using the following code:
ceu_LD_r <- cor(ceu)
ceu_LD_Dprime <- Dprime(ceu)
The results show that there is variation in the linkage disequilibrium among pairs of SNPs across the different populations. This indicates that there is genetic diversity among the different populations. The results also show that the estimates of linkage disequilibrium using r and D' are similar.
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The weight of 6 rare snails are provided 21,24,27,31,27.28 a.
calculate M b.calculate Q1.Q3,IQR c.create a box plot
The weight of 6 rare snails are provided 21,24,27,31,27.28:
a. Calculate the mean (M):
To calculate the mean, add up the six numbers and divide by 6. The mean is 26.
b. Calculate the first quartile (Q1) and third quartile (Q3), and the interquartile range (IQR):
First, arrange the numbers in ascending order: 21, 24, 27, 27, 28, 31. Then, Q1 is the median of the first three numbers (21, 24, 27) which is 24. Q3 is the median of the last three numbers (27, 28, 31) which is 28. The IQR is Q3 - Q1 = 28 - 24 = 4.
c. Create a box plot:
The box plot would consist of the following elements: a box, a whisker, and a line inside the box representing the median (M). The box would contain the lower quartile (Q1) and upper quartile (Q3).
The whisker would extend from Q1 to the lowest number (21) and from Q3 to the highest number (31). The line inside the box would represent the mean (M), which is 26.
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. When cyanobacteria formed on early Earth, do you think oxygen levels began rising at the same time, or did the levels rise at a later time?
Oxygen levels would have started rising as soon as cyanobacteria evolved, but it took a significant amount of time for the levels to rise to levels that could support complex life forms.
What is a Cyanobacteria?
Cyanobacteria are photosynthetic bacteria that produce oxygen through photosynthesis. When they first evolved on Earth, they would have started releasing oxygen as a byproduct of their metabolic processes.
However, it is believed that the initial rise in oxygen levels was relatively slow and took several hundred million years. This is because much of the early oxygen was likely absorbed by iron and other minerals in the Earth's crust before it could accumulate in the atmosphere.
As these minerals became saturated with oxygen, it gradually began to accumulate in the atmosphere.
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What is an example of a non steroidal anti-inflammatory drug?
Non-steroidal anti-inflammatory drugs (NSAIDs) are medications that are used to reduce inflammation and relieve pain. Examples of NSAIDs include ibuprofen (Advil, Motrin), naproxen (Aleve), and aspirin.
A nonsteroidal anti-inflammatory medicine (NSAID) called ibuprofen is used to treat inflammation, fever, and pain. This includes rheumatoid arthritis, migraines, and painful menstrual cycles. It can also be used to close a premature baby's patent ductus arteriosus. It can be administered intravenously or orally. Usually, it starts working after an hour.
Naproxen is a nonsteroidal anti-inflammatory drug (NSAID) used to treat pain, menstrual cramps, inflammatory diseases like rheumatoid arthritis, gout, and fever. It is also marketed under the brand name Aleve among others. It is consumed orally . It is offered in formulations for both immediate and delayed release. Effects begin to take action within an hour and can last up to twelve hours.
Acetylsalicylic acid (ASA), generally known as aspirin, is a nonsteroidal anti-inflammatory medication (NSAID) used to treat inflammation, fever, and/or pain as well as a blood thinner. Aspirin is used to treat a variety of inflammatory disorders, including Kawasaki disease, pericarditis, and rheumatic fever. Long-term usage of aspirin is also used to help those at high risk avoid further heart attacks, ischemic strokes, and blood clots. Effects often start within 30 minutes for pain or fever. While aspirin functions similarly to other NSAIDs, it also inhibits platelets' natural function.
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